2010年3月13日 星期六

Access : Somatic sex identity is cell autonomous in the chicken : Nature

Nature 464, 237-242 (11 March 2010) | doi:10.1038/nature08852; Received 10 August 2009; Accepted 18 January 2010

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Somatic sex identity is cell autonomous in the chicken

D. Zhao1,5, D. McBride1,5, S. Nandi1, H. A. McQueen3, M. J. McGrew1, P. M. Hocking2, P. D. Lewis4, H. M. Sang1 & M. Clinton1

  1. Division of Developmental Biology and,
  2. Division of Genetics and Genomics, The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Roslin, Midlothian EH25 9PS, UK
  3. Institute of Cell Biology, University of Edinburgh, West Mains Road, Edinburgh EH9 3JR, UK
  4. Animal and Poultry Science Department, University of KwaZulu-Natal, Pietermaritzburg, South Africa
  5. These authors contributed equally to this work.

Correspondence to: M. Clinton1 Correspondence and requests for materials should be addressed to M.C. (Email: Michael.clinton@roslin.ed.ac.uk).

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In the

mammalian
mammalian model of sex determination, embryos are considered to be sexually indifferent until the transient action of a sex-determining gene initiates gonadal differentiation. Although this model is thought to apply to all vertebrates, this has yet to be established. Here we have examined three lateral gynandromorph chickens (a rare, naturally occurring phenomenon in which one side of the animal appears male and the other female) to investigate the sex-determining mechanism in birds. These studies demonstrated that gynandromorph birds are genuine male:female chimaeras, and indicated that male and female avian somatic cells may have an inherent sex identity. To test this hypothesis, we transplanted presumptive mesoderm between embryos of reciprocal sexes to generate embryos containing male:female chimaeric gonads. In contrast to the outcome for mammalian mixed-sex chimaeras, in chicken mixed-sex chimaeras the donor cells were excluded from the functional structures of the host gonad. In an example where female tissue was transplanted into a male host, donor cells contributing to the developing testis retained a female identity and expressed a marker of female function. Our study demonstrates that avian somatic cells possess an inherent sex identity and that, in birds, sexual differentiation is substantively cell autonomous.
  1. Division of Developmental Biology and,
  2. Division of Genetics and Genomics, The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Roslin, Midlothian EH25 9PS, UK
  3. Institute of Cell Biology, University of Edinburgh, West Mains Road, Edinburgh EH9 3JR, UK
  4. Animal and Poultry Science Department, University of KwaZulu-Natal, Pietermaritzburg, South Africa
  5. These authors contributed equally to this work.

Correspondence to: M. Clinton1 Correspondence and requests for materials should be addressed to M.C. (Email: Michael.clinton@roslin.ed.ac.uk).

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2010年3月9日 星期二

自由電子報 - 線路凸槌 樂多日誌斷線5小時 - 我斷到現在...

線路凸槌 樂多日誌斷線5小時

〔記者王珮華/台北報導〕提供約三十萬個部落格寄居的「樂多日誌」,昨驚傳服務停擺,網站更一度被轉址到廣告頁面,心急如焚的部落客懷疑網站被駭。樂多表示,是樂多網域註冊商線路發生問題,經四、五個小時修復,昨晚已陸續回復正常。

昨日近午,陸續有網友反映無法連上「樂多」,之後更有網友反映,連上之後卻出現英文廣告頁面,下方還有色情廣告,懷疑樂多可能被駭客入侵,「噗浪」上也有熱心網友呼籲暫時勿點入樂多日誌頁面,以免遭駭。許多部落客無法登入寫文,唯恐苦心經營一夕泡湯,紛紛在網路上吐苦水。

樂多表示,網誌平台無法連上是因網域註冊商Network solution線路故障,並不是被駭客入侵,請網友放心,待國外網域註冊商修復,狀況才能全部解除。不過截至晚間為止,部份部落格仍無法正常連上,網友則分享連上樂多的方法。

網友透過設定Google公共DNS伺服器,來解決網域註冊商連線問題,找到作業系統下的TCP/IP網路設定,指定慣用DNS伺服器與其他DNS伺服器,改為Google提供的8.8.8.8與8.8.4.4,大約幾分鐘就能正常瀏覽樂多日誌了。

「樂多日誌」為國內重要部落格服務提供者,以深具深度的文字與特色部落客,在網路界享有盛名。

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THE COVE - 日本與鯨豚的戰爭仍然持續中

2010年3月8日 星期一

偽虎鯨半夜拖上岸 一覺醒來剩半條 - 放風聲出去,一下就可以把怕死的人拎回籠

偽虎鯨半夜拖上岸 一覺醒來剩半條

「怎麼還會有民眾吃鯨豚!」昨天晚上在長濱海邊擱淺死亡的偽虎鯨,今天上午發現被支解僅剩半隻,中華鯨豚協會人員研判,可能民眾將新鮮的肉切割帶回食用。

海巡署東部地區巡防局岸巡第82大隊昨天晚上接獲通報,長濱齒草橋前方海灘發現鯨魚擱淺,82大隊立即派人前往搶救,經過半個小時救援,鯨魚仍因有多處創傷死亡。

岸巡人員將鯨豚搬至岸邊,通知中華鯨豚協會和台東縣政府農業局自然保育課人員今天上午到場辨識鯨豚種類和了解擱淺原因。

未料,一大早鯨豚協會專員邱冠蓉和台東縣政府自然保育科長蔡和見趕到現場,看了嚇一跳;邱冠蓉說,鯨豚新鮮部分和背鰭都被支解帶走,「整隻鯨豚剩下一半的肉,怎麼還有人吃鯨豚肉呢?」

邱冠蓉說,這隻鯨豚是少見的偽虎鯨,因數量少,擱淺的機率相對低,這隻長3公尺,身體「瘦到看到肋骨」,明顯是生病了,民眾吃到病肉,會不會傷害身體,讓人憂心。

【2010/03/09 中央社】

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2010年3月4日 星期四

Do scientists really need a PhD? : Article : Nature

Editorial

Nature 464, 7 (4 March 2010) | doi:10.1038/464007a; Published online 3 March 2010

Do scientists really need a PhD?

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Young scientists at a Chinese genomics institute are foregoing conventional postgraduate training for the chance to be part of major scientific initiatives. Is this the way of the future?

The approach to extended postgraduate training varies from country to country. The United States and Europe, for example, have long believed that students need to finish a multiyear programme of postgraduate work before they can fully participate in the front rank of research, whether in industry or academia.

In Asia, scientific communities instead tend to value directed, practical research. In Japan, for example, industry accounts for a much higher proportion of the scientific budget than in the West, and managers there often say that they prefer university graduates who they can train in-house. As a result, relatively little emphasis is given to academic postgraduate training.

Perhaps the most extreme example of this approach is at the BGI in Shenzen, China — the genomic-sequencing juggernaut formerly known as the Beijing Genomics Institute (see page 22). Some 500 Chinese university students have already signed up to join the BGI after they graduate this summer. There they will help to piece together DNA data from an expanding set of sequences for microbes, plants and animals. The students will join a cohort of young bioinformaticians who get their data from the most advanced sequencing equipment, process them on what will soon be one of the world's fastest computers, collaborate with international leaders of their respective fields, publish — as first authors — in premier international journals, attend conferences and accept interviews.

If Nature's interviews are anything to go by, these BGI researchers are smart, confident and, for their age, tremendously experienced. Yet few of them seem to have any plans to pursue postgraduate education. Are these budding scientists short-changing themselves by focusing so single-mindedly on one category of technical expertise in the shape of high-throughput genomic sequencing? Would the slower, less tightly focused training provided by Western-style postgraduate study ultimately allow them to become more imaginative and creative in their research?

By focusing on one category of technical expertise are the BGI's budding scientists short-changing themselves?

The answer is not clear-cut. Although external collaborators provide the scientific agenda for most BGI projects, the institute's youngsters work closely with them on the design of the projects, giving scientific input and integrating the scientific needs of their collaborators into the data analysis. China's staid hierarchy and the reliance of its education system on learning by rote are often blamed for destroying creativity, so this chance for self-direction and the assumption of responsibility for a project may well help to produce the dynamic leaders of the future.

Nonetheless, the burden of proof for this experiment is on the BGI. Can the organization prepare its student-workers to meet the wide range of skills needed by industry and academia? Will they understand not just the science and technology of their research, but also ethical aspects such as the need for data integrity, the maintenance of standards and the protection of confidential human-subject information? Will this group be able to train the next generation, given that both the biology and the technology are likely to keep changing dramatically?

The BGI has yet to show how successfully it can answer such questions. It is, however, already bringing university professors in from a nearby university to lecture its students. And it is enhancing its in-house expertise by hiring academically trained biologists who can help to design biologically, medically or agriculturally relevant projects.

Given the increasing rigidity and length of the Western academic pipeline — which now extends so far beyond the PhD that the average age for first-time principal investigators on grants from the US National Institutes of Health is 42 — the BGI model may be worth serious consideration. From one perspective, it is just a logical, albeit radical, extension of programmes such as the US National Science Foundation's Research Experience for Undergraduates, which have demonstrated that younger students can usefully participate in and contribute to hands-on research. If the BGI can pull it off, it might find itself a model not only for creative approaches to genomics but also for education and training.

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BBC News - Did the discovery of cooking make us human?

Did the discovery of cooking make us human?

By Clare Kingston
BBC Horizon

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Learning to cook created 'big brains'

Cooking is something we all take for granted but a new theory suggests that if we had not learned to cook food, not only would we still look like chimps but, like them, we would also be compelled to spend most of the day chewing.

Without cooking, an average person would have to eat around five kilos of raw food to get enough calories to survive.

The daily mountain of fruit and vegetables would mean a six-hour chewing marathon.

It is already accepted that the introduction of meat into our ancestors' diet caused their brains to grow and their intelligence to increase.

Meat - a more concentrated form of energy - not only meant bigger brains for our ancestors, but also an end to the need to devote nearly all their time to foraging to maintain energy levels.

As a consequence, more time was available for social structure to develop.

'Accident'

Harvard Professor Richard Wrangham believes there is more to it than simply discovering meat.

Australopithecus
Australopithecus was ape-like but walked upright like humans

He thinks that it is not so much a change in the ingredients of our diet, but the way in which we prepare them that has caused the radical evolution of our species.

"I think cooking is arguably the biggest increase in the quality of the diet in the whole of the history of life," he says.

"Our ancestors most probably dropped food in fire accidently. They would have found it was delicious and that set us off on a whole new direction."

To understand how and when our bodies changed, we need to take a closer look at what our ancestors ate by studying the fossil records.

Our earliest ancestor was the ape-like Australopithecus.

Australopithecus had a large belly containing a big large-intestine, essential to digest the robust plant matter, and had large, flat teeth which it used for grinding and crushing tough vegetation.

None the less, it was Australopithecus that moved out of the trees and onto the African savannah, and started to eat the animals that grazed there.

And it was this change of habitat, lifestyle and diet that also prompted major changes in anatomy.

Bigger brain

The eating of meat ties in with an evolutionary shift 2.3 million years ago resulting in a more human-looking ancestor with sharper teeth and a 30% bigger brain, called Homo habilis.

Scan of human head
The brain consumes 20% of a person's energy while sitting

The most momentous shift however, happened 1.8 million years ago when Homo erectus - our first "truly human" ancestor arrived on the scene.

Homo erectus had an even bigger brain, smaller jaws and teeth.

Erectus also had a similar body shape to us. Shorter arms and longer legs appeared, and gone was the large vegetable-processing gut, meaning that Erectus could not only walk upright, but could also run.

He was cleverer and faster, and - according to Professor Wrangham - he had learned how to cook.

"Cooking made our guts smaller," he says. "Once we cooked our food, we didn't need big guts.

"They're costly in terms of energy. Individuals that were born with small guts were able to save energy, have more babies and survive better."

Professor Peter Wheeler from Liverpool John Moores University and his colleague, Leslie Aiello, think it was this change in our digestive system that specifically allowed our brains to get larger.

Energy transfer

Cooking food breaks down its cells, meaning that our stomachs need to do less work to liberate the nutrients our bodies need.

This, says Wheeler, "freed up energy which could then be used to power a larger brain. The increase in brain-size mirrors the reduction in the size of the gut."

Significantly Wheeler and Aiello found that the reduction in the size of our digestive system was exactly the same amount that our brains grew by - 20%.

Professor Stephen Secor at the University of Alabama found that not only does cooked food release more energy, but the body uses less energy in digesting it.

He uses pythons as a model for digestion as they stay still for up to six days while digesting a meal. This makes them the perfect model as the only energy they expend is on digestion.

His research shows that pythons use 24% less energy digesting cooked meat, compared with raw.

So being human might all be down to energy.

Cooking is essentially a form of pre-digestion, which has transferred energy use from our guts to our brains.

According to Professors Wheeler and Wrangham and their colleagues, it is no coincidence that humans - the cleverest species on earth - are also the only species that cooks.

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Human Culture Plays a Role in Natural Selection - NYTimes.com

March 1, 2010

Human Culture, an Evolutionary Force

As with any other species, human populations are shaped by the usual forces of natural selection, like famine, disease or climate. A new force is now coming into focus. It is one with a surprising implication — that for the last 20,000 years or so, people have inadvertently been shaping their own evolution.

The force is human culture, broadly defined as any learned behavior, including technology. The evidence of its activity is the more surprising because culture has long seemed to play just the opposite role. Biologists have seen it as a shield that protects people from the full force of other selective pressures, since clothes and shelter dull the bite of cold and farming helps build surpluses to ride out famine.

Because of this buffering action, culture was thought to have blunted the rate of human evolution, or even brought it to a halt, in the distant past. Many biologists are now seeing the role of culture in a quite different light.

Although it does shield people from other forces, culture itself seems to be a powerful force of natural selection. People adapt genetically to sustained cultural changes, like new diets. And this interaction works more quickly than other selective forces, “leading some practitioners to argue that gene-culture co-evolution could be the dominant mode of human evolution,” Kevin N. Laland and colleagues wrote in the February issue of Nature Reviews Genetics. Dr. Laland is an evolutionary biologist at the University of St. Andrews in Scotland.

The idea that genes and culture co-evolve has been around for several decades but has started to win converts only recently. Two leading proponents, Robert Boyd of the University of California, Los Angeles, and Peter J. Richerson of the University of California, Davis, have argued for years that genes and culture were intertwined in shaping human evolution. “It wasn’t like we were despised, just kind of ignored,” Dr. Boyd said. But in the last few years, references by other scientists to their writings have “gone up hugely,” he said.

The best evidence available to Dr. Boyd and Dr. Richerson for culture being a selective force was the lactose tolerance found in many northern Europeans. Most people switch off the gene that digests the lactose in milk shortly after they are weaned, but in northern Europeans — the descendants of an ancient cattle-rearing culture that emerged in the region some 6,000 years ago — the gene is kept switched on in adulthood.

Lactose tolerance is now well recognized as a case in which a cultural practice — drinking raw milk — has caused an evolutionary change in the human genome. Presumably the extra nutrition was of such great advantage that adults able to digest milk left more surviving offspring, and the genetic change swept through the population.

This instance of gene-culture interaction turns out to be far from unique. In the last few years, biologists have been able to scan the whole human genome for the signatures of genes undergoing selection. Such a signature is formed when one version of a gene becomes more common than other versions because its owners are leaving more surviving offspring. From the evidence of the scans, up to 10 percent of the genome — some 2,000 genes — shows signs of being under selective pressure.

These pressures are all recent, in evolutionary terms — most probably dating from around 10,000 to 20,000 years ago, in the view of Mark Stoneking, a geneticist at the Max Planck Institute for Evolutionary Anthropology in Leipzig, Germany. Biologists can infer the reason for these selective forces from the kinds of genes that are tagged by the genome scans. The roles of most of the 20,000 or so genes in the human genome are still poorly understood, but all can be assigned to broad categories of likely function depending on the physical structure of the protein they specify.

By this criterion, many of the genes under selection seem to be responding to conventional pressures. Some are involved in the immune system, and presumably became more common because of the protection they provided against disease. Genes that cause paler skin in Europeans or Asians are probably a response to geography and climate.

But other genes seem to have been favored because of cultural changes. These include many genes involved in diet and metabolism and presumably reflect the major shift in diet that occurred in the transition from foraging to agriculture that started about 10,000 years ago.

Amylase is an enzyme in the saliva that breaks down starch. People who live in agrarian societies eat more starch and have extra copies of the amylase gene compared with people who live in societies that depend on hunting or fishing. Genetic changes that enable lactose tolerance have been detected not just in Europeans but also in three African pastoral societies. In each of the four cases, a different mutation is involved, but all have the same result — that of preventing the lactose-digesting gene from being switched off after weaning.

Many genes for taste and smell show signs of selective pressure, perhaps reflecting the change in foodstuffs as people moved from nomadic to sedentary existence. Another group under pressure is that of genes that affect the growth of bone. These could reflect the declining weight of the human skeleton that seems to have accompanied the switch to settled life, which started some 15,000 years ago.

A third group of selected genes affects brain function. The role of these genes is unknown, but they could have changed in response to the social transition as people moved from small hunter-gatherer groups a hundred strong to villages and towns inhabited by several thousand, Dr. Laland said. “It’s highly plausible that some of these changes are a response to aggregation, to living in larger communities,” he said.

Though the genome scans certainly suggest that many human genes have been shaped by cultural forces, the tests for selection are purely statistical, being based on measures of whether a gene has become more common. To verify that a gene has indeed been under selection, biologists need to perform other tests, like comparing the selected and unselected forms of the gene to see how they differ.

Dr. Stoneking and his colleagues have done this with three genes that score high in statistical tests of selection. One of the genes they looked at, called the EDAR gene, is known to be involved in controlling the growth of hair. A variant form of the EDAR gene is very common in East Asians and Native Americans, and is probably the reason that these populations have thicker hair than Europeans or Africans.

Still, it is not obvious why this variant of the EDAR gene was favored. Possibly thicker hair was in itself an advantage, retaining heat in Siberian climates. Or the trait could have become common through sexual selection, because people found it attractive in their partners.

A third possibility comes from the fact that the gene works by activating a gene regulator that controls the immune system as well as hair growth. So the gene could have been favored because it conferred protection against some disease, with thicker hair being swept along as a side effect. Or all three factors could have been at work. “It’s one of the cases we know most about, and yet there’s a lot we don’t know,” Dr. Stoneking said.

The case of the EDAR gene shows how cautious biologists have to be in interpreting the signals of selection seen in the genome scans. But it also points to the potential of the selective signals for bringing to light salient events in human prehistory as modern humans dispersed from the ancestral homeland in northeast Africa and adapted to novel environments. “That’s the ultimate goal,” Dr. Stoneking said. “I come from the anthropological perspective, and we want to know what the story is.”

With archaic humans, culture changed very slowly. The style of stone tools called the Oldowan appeared 2.5 million years ago and stayed unchanged for more than a million years. The Acheulean stone tool kit that succeeded it lasted for 1.5 million years. But among behaviorally modern humans, those of the last 50,000 years, the tempo of cultural change has been far brisker. This raises the possibility that human evolution has been accelerating in the recent past under the impact of rapid shifts in culture.

Some biologists think this is a possibility, though one that awaits proof. The genome scans that test for selection have severe limitations. They cannot see the signatures of ancient selection, which get washed out by new mutations, so there is no base line by which to judge whether recent natural selection has been greater than in earlier times. There are also likely to be many false positives among the genes that seem favored.

But the scans also find it hard to detect weakly selected genes, so they may be picking up just a small fraction of the recent stresses on the genome. Mathematical models of gene-culture interaction suggest that this form of natural selection can be particularly rapid. Culture has become a force of natural selection, and if it should prove to be a major one, then human evolution may be accelerating as people adapt to pressures of their own creation.

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